MySQL Essentials
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We all know that backups must be scheduled periodically. A full backups (a snapshot of the data at a point in time) can be done in MySQL with several tools. For example, InnoDB Hot Backup provides online non-blocking physical backup of the InnoDB data files, and mysqldump provides online logical backup. This discussion uses mysqldump.

Assume that we make a backup on Sunday at 1 p.m., when load is low. The following command makes a full backup of all our InnoDB tables in all databases:

shell> mysqldump --single-transaction --all-databases > backup_sunday_1_PM.sql

This is an online, non-blocking backup that does not disturb the reads and writes on the tables. We assumed earlier that our tables are InnoDB tables, so --single-transaction uses a consistent read and guarantees that data seen by mysqldump does not change. (Changes made by other clients to InnoDB tables are not seen by the mysqldump process.) If we do also have other types of tables, we must assume that they are not changed during the backup. For example, for the MyISAM tables in the mysql database, we must assume that no administrative changes are being made to MySQL accounts during the backup.

The resulting .sql file produced by mysqldump contains a set of SQL INSERT statements that can be used to reload the dumped tables at a later time.

Full backups are necessary, but they are not always convenient. They produce large backup files and take time to generate. They are not optimal in the sense that each successive full backup includes all data, even that part that has not changed since the previous full backup. After we have made the initial full backup, it is more efficient to make incremental backups. They are smaller and take less time to produce. The tradeoff is that, at recovery time, you cannot restore your data just by reloading the full backup. You must also process the incremental backups to recover the incremental changes.

To make incremental backups, we need to save the incremental changes. The MySQL server should always be started with the --log-bin option so that it stores these changes in a file while it updates data. This option enables binary logging, so that the server writes each SQL statement that updates data into a file called a MySQL binary log. Looking at the data directory of a MySQL server that was started with the --log-bin option and that has been running for some days, we find these MySQL binary log files:

-rw-rw---- 1 guilhem  guilhem   1277324 Nov 10 23:59 gbichot2-bin.000001
-rw-rw---- 1 guilhem  guilhem         4 Nov 10 23:59 gbichot2-bin.000002
-rw-rw---- 1 guilhem  guilhem        79 Nov 11 11:06 gbichot2-bin.000003
-rw-rw---- 1 guilhem  guilhem       508 Nov 11 11:08 gbichot2-bin.000004
-rw-rw---- 1 guilhem  guilhem 220047446 Nov 12 16:47 gbichot2-bin.000005
-rw-rw---- 1 guilhem  guilhem    998412 Nov 14 10:08 gbichot2-bin.000006
-rw-rw---- 1 guilhem  guilhem       361 Nov 14 10:07 gbichot2-bin.index

Each time it restarts, the MySQL server creates a new binary log file using the next number in the sequence. While the server is running, you can also tell it to close the current binary log file and begin a new one manually by issuing a FLUSH LOGS SQL statement or with a mysqladmin flush-logs command. mysqldump also has an option to flush the logs. The .index file in the data directory contains the list of all MySQL binary logs in the directory. This file is used for replication.

The MySQL binary logs are important for recovery because they form the set of incremental backups. If you make sure to flush the logs when you make your full backup, then any binary log files created afterward contain all the data changes made since the backup. Let's modify the previous mysqldump command a bit so that it flushes the MySQL binary logs at the moment of the full backup, and so that the dump file contains the name of the new current binary log:

shell> mysqldump --single-transaction --flush-logs --master-data=2 \
         --all-databases > backup_sunday_1_PM.sql

After executing this command, the data directory contains a new binary log file, gbichot2-bin.000007. The resulting .sql file includes these lines:

-- Position to start replication or point-in-time recovery from
-- CHANGE MASTER TO MASTER_LOG_FILE='gbichot2-bin.000007',MASTER_LOG_POS=4;

Because the mysqldump command made a full backup, those lines mean two things:

On Monday at 1 p.m., we can create an incremental backup by flushing the logs to begin a new binary log file. For example, executing a mysqladmin flush-logs command creates gbichot2-bin.000008. All changes between the Sunday 1 p.m. full backup and Monday 1 p.m. will be in the gbichot2-bin.000007 file. This incremental backup is important, so it is a good idea to copy it to a safe place. (For example, back it up on tape or DVD, or copy it to another machine.) On Tuesday at 1 p.m., execute another mysqladmin flush-logs command. All changes between Monday 1 p.m. and Tuesday 1 p.m. will be in the gbichot2-bin.000008 file (which also should be copied somewhere safe).

The MySQL binary logs take up disk space. To free up space, purge them from time to time. One way to do this is by deleting the binary logs that are no longer needed, such as when we make a full backup:

shell> mysqldump --single-transaction --flush-logs --master-data=2 \
         --all-databases --delete-master-logs > backup_sunday_1_PM.sql

Note: Deleting the MySQL binary logs with mysqldump --delete-master-logs can be dangerous if your server is a replication master server, because slave servers might not yet fully have processed the contents of the binary log. The description for the PURGE MASTER LOGS statement explains what should be verified before deleting the MySQL binary logs. See Section 13.6.1.1, “PURGE MASTER LOGS Syntax”.