The key to safe database management is making regular backups.

InnoDB Hot Backup is an online backup tool you can use to backup your InnoDB database while it is running. InnoDB Hot Backup does not require you to shut down your database and it does not set any locks or disturb your normal database processing. InnoDB Hot Backup is a non-free (commercial) add-on tool with an annual license fee of €390 per computer on which the MySQL server is run. See the InnoDB Hot Backup home page for detailed information and screenshots.

If you are able to shut down your MySQL server, you can make a binary backup that consists of all files used by InnoDB to manage its tables. Use the following procedure:

Replication works with InnoDB tables, so you can use MySQL replication capabilities to keep a copy of your database at database sites requiring high availability.

In addition to making binary backups as just described, you should also regularly make dumps of your tables with mysqldump. The reason for this is that a binary file might be corrupted without you noticing it. Dumped tables are stored into text files that are human-readable, so spotting table corruption becomes easier. Also, because the format is simpler, the chance for serious data corruption is smaller. mysqldump also has a --single-transaction option that you can use to make a consistent snapshot without locking out other clients.

To be able to recover your InnoDB database to the present from the binary backup just described, you have to run your MySQL server with binary logging turned on. Then you can apply the binary log to the backup database to achieve point-in-time recovery:

mysqlbinlog yourhostname-bin.123 | mysql

To recover from a crash of your MySQL server, the only requirement is to restart it. InnoDB automatically checks the logs and performs a roll-forward of the database to the present. InnoDB automatically rolls back uncommitted transactions that were present at the time of the crash. During recovery, mysqld displays output something like this:

InnoDB: Database was not shut down normally.
InnoDB: Starting recovery from log files...
InnoDB: Starting log scan based on checkpoint at
InnoDB: log sequence number 0 13674004
InnoDB: Doing recovery: scanned up to log sequence number 0 13739520
InnoDB: Doing recovery: scanned up to log sequence number 0 13805056
InnoDB: Doing recovery: scanned up to log sequence number 0 13870592
InnoDB: Doing recovery: scanned up to log sequence number 0 13936128
...
InnoDB: Doing recovery: scanned up to log sequence number 0 20555264
InnoDB: Doing recovery: scanned up to log sequence number 0 20620800
InnoDB: Doing recovery: scanned up to log sequence number 0 20664692
InnoDB: 1 uncommitted transaction(s) which must be rolled back
InnoDB: Starting rollback of uncommitted transactions
InnoDB: Rolling back trx no 16745
InnoDB: Rolling back of trx no 16745 completed
InnoDB: Rollback of uncommitted transactions completed
InnoDB: Starting an apply batch of log records to the database...
InnoDB: Apply batch completed
InnoDB: Started
mysqld: ready for connections

If your database gets corrupted or your disk fails, you have to do the recovery from a backup. In the case of corruption, you should first find a backup that is not corrupted. After restoring the base backup, do the recovery from the binary log files using mysqlbinlog and mysql to restore the changes performed after the backup was made.

In some cases of database corruption it is enough just to dump, drop, and re-create one or a few corrupt tables. You can use the CHECK TABLE SQL statement to check whether a table is corrupt, although CHECK TABLE naturally cannot detect every possible kind of corruption. You can use innodb_tablespace_monitor to check the integrity of the file space management inside the tablespace files.

In some cases, apparent database page corruption is actually due to the operating system corrupting its own file cache, and the data on disk may be okay. It is best first to try restarting your computer. Doing so may eliminate errors that appeared to be database page corruption.